5UUU Transferase Transferase Inhibitor date Feb 17, 2017
title Design, Synthesis, And Evaluation Of The First Selective And Protein-Coupled Receptor Kinase 2 (Grk2) Inhibitor For The Treatment Of Heart Failure
authors I.D.Hoffman, J.D.Lawson
compound source
Molecule: Beta-Adrenergic Receptor Kinase 1
Chain: A
Fragment: Unp Residues 23-538
Synonym: Beta-Ark-1,G-Protein Coupled Receptor Kinase 2
Ec: 2.7.11.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grk2, Adrbk1, Bark, Bark1
Expression_system: Baculovirus Expression Vector Pfastbac1-
Expression_system_taxid: 274590
Expression_system_strain: Sf9
Expression_system_vector_type: Virus
Expression_system_plasmid: Pfastbachtb
symmetry Space Group: P 31 2 1
R_factor 0.213 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.180 126.180 96.369 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand MES, QRW, SO4 enzyme Transferase E.C.2.7.11.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign, Synthesis, and Evaluation of the Highly Selective and Potent G-Protein-Coupled Receptor Kinase 2 (GRK2) Inhibitor for the Potential Treatment of Heart Failure., Okawa T, Aramaki Y, Yamamoto M, Kobayashi T, Fukumoto S, Toyoda Y, Henta T, Hata A, Ikeda S, Kaneko M, Hoffman ID, Sang BC, Zou H, Kawamoto T, J Med Chem. 2017 Aug 24;60(16):6942-6990. doi: 10.1021/acs.jmedchem.7b00443. Epub, 2017 Aug 3. PMID:28699740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (5uuu.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 5UUU
  • CSU: Contacts of Structural Units for 5UUU
  • Structure Factors (702 Kb)
  • Retrieve 5UUU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UUU from S2C, [Save to disk]
  • Re-refined 5uuu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UUU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UUU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uuu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UUU
  • Community annotation for 5UUU at PDBWiki (http://pdbwiki.org)

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