5UZ9 Immune System Rna date Feb 25, 2017
title Cryo Em Structure Of Anti-Crisprs, Acrf1 And Acrf2, Bound To Crrna-Guided Crispr Surveillance Complex
authors S.Chowdhury, J.Carter, M.F.Rollins, R.N.Jackson, C.Hoffmann, L.No J.Bondy-Denomy, K.L.Maxwell, A.R.Davidson, E.R.Fischer, G.C.Lan B.Wiedenheft
compound source
Molecule: Crispr-Associated Protein Csy1
Chain: A
Synonym: Cas8f
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa (Strain Ucbpp-P
Organism_taxid: 208963
Strain: Ucbpp-Pa14
Gene: Csy1, Pa14_33330
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Crispr-Associated Protein Csy2
Chain: B
Synonym: Cas5f
Engineered: Yes

Organism_scientific: Pseudomonas Aeruginosa (Strain Ucbpp-P
Organism_taxid: 208963
Strain: Ucbpp-Pa14
Gene: Csy2, Pa14_33320
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Crispr-Associated Protein Csy3
Chain: C, D, E, F, G, H
Synonym: Cas7f
Engineered: Yes

Organism_scientific: Pseudomonas Aeruginosa (Strain Ucbpp-P
Organism_taxid: 208963
Strain: Ucbpp-Pa14
Gene: Csy3, Csy1-3, Pa14_33310
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Anti-Crispr Protein Acr30-35
Chain: I, J
Synonym: Acrf1
Engineered: Yes

Organism_scientific: Pseudomonas Phage Jbd30
Organism_taxid: 1223260
Gene: Jbd30_035
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: P15tv-L

Molecule: Anti-Crispr Protein 30
Chain: K
Synonym: Gene Product 30, Gp30, Acrf2
Engineered: Yes

Organism_scientific: Pseudomonas Phage D3112
Organism_taxid: 10708
Gene: Orf30
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: P15tv-L

Molecule: Crispr-Associated Endonuclease Cas6csy4
Chain: L
Synonym: Cas6f
Ec: 3.1.-.-
Engineered: Yes

Organism_scientific: Pseudomonas Aeruginosa (Strain Ucbpp-P
Organism_taxid: 208963
Strain: Ucbpp-Pa14
Gene: Cas6f, Csy4, Pa14_33300
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Crispr Rna (60-Mer)
Chain: M
Engineered: Yes

Synthetic: Yes
Organism_scientific: Pseudomonas Aeruginosa Ucbpp-Pa14
Organism_taxid: 208963
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.40 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene JBD30 ; PA14 ; PA14 ; PA14 ; PA14
Gene
Ontology
ChainFunctionProcessComponent
A


B


F, E, H, C, D, G


K


L
  • nuclease activity
  • endonuclease activity


  • Primary referenceStructure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex., Chowdhury S, Carter J, Rollins MF, Golden SM, Jackson RN, Hoffmann C, Nosaka L, Bondy-Denomy J, Maxwell KL, Davidson AR, Fischer ER, Lander GC, Wiedenheft B, Cell. 2017 Mar 23;169(1):47-57.e11. doi: 10.1016/j.cell.2017.03.012. PMID:28340349
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2166 Kb) [Save to disk]
  • Biological Unit Coordinates (5uz9.pdb1.gz) 436 Kb
  • CSU: Contacts of Structural Units for 5UZ9
  • Retrieve 5UZ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UZ9 from S2C, [Save to disk]
  • View 5UZ9 in 3D
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  • Visual 3D analysis of 5UZ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uz9_H] [5uz9_I] [5uz9_M] [5uz9_G] [5uz9_J] [5uz9_B] [5uz9_A] [5uz9] [5uz9_D] [5uz9_L] [5uz9_C] [5uz9_K] [5uz9_F] [5uz9_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UZ9
  • Community annotation for 5UZ9 at PDBWiki (http://pdbwiki.org)

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