5V3J Transferase Dna date Mar 07, 2017
title Mousezfp568-Znf1-10 In Complex With Dna
authors A.Patel, X.Cheng
compound source
Molecule: Dna (26-Mer)
Chain: A, C
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Mus
Organism_taxid: 10088

Molecule: Dna (26-Mer)
Chain: B, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mus
Organism_taxid: 10088

Molecule: Zinc Finger Protein 568
Chain: E, F
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Znf568, Chato, Zfp568
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pgex-6p1
symmetry Space Group: P 1
R_factor 0.192 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.787 65.706 73.022 100.52 104.25 97.25
method X-Ray Diffractionresolution 2.06 Å
ligand MG, TRS, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • Biological Unit Coordinates (5v3j.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (5v3j.pdb2.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 5V3J
  • CSU: Contacts of Structural Units for 5V3J
  • Structure Factors (1424 Kb)
  • Retrieve 5V3J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V3J from S2C, [Save to disk]
    • View 5V3J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5V3J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v3j_E] [5v3j_A] [5v3j_C] [5v3j_D] [5v3j_F] [5v3j_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5V3J
  • Community annotation for 5V3J at PDBWiki (http://pdbwiki.org)

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