5V47 Chaperone date Mar 08, 2017
title Crystal Structure Of The Sr1 Domain Of Lizard Sacsin
authors T.Pan, M.Menade, G.Kozlov, K.Gehring
compound source
Molecule: Lizard Sacsin
Chain: A, B
Fragment: Unp Residues 96-343
Engineered: Yes
Organism_scientific: Anolis Carolinensis
Organism_common: Green Anole
Organism_taxid: 28377
Gene: Sacs
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: C 1 2 1
R_factor 0.195 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.779 38.164 114.721 90.00 131.55 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand SO4 enzyme
Primary referenceStructures of Ubl and Hsp90-like domains of sacsin provide insight into pathological mutations., Menade M, Kozlov G, Trempe JF, Pande H, Shenker S, Wickremasinghe S, Li X, Hojjat H, Dicaire MJ, Brais B, McPherson PS, Wong MJH, Young JC, Gehring K, J Biol Chem. 2018 Jun 26. pii: RA118.003939. doi: 10.1074/jbc.RA118.003939. PMID:29945973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (5v47.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (5v47.pdb2.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 5V47
  • CSU: Contacts of Structural Units for 5V47
  • Structure Factors (1267 Kb)
  • Retrieve 5V47 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V47 from S2C, [Save to disk]
  • Re-refined 5v47 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5V47 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V47
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v47_A] [5v47] [5v47_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V47
  • Community annotation for 5V47 at PDBWiki (http://pdbwiki.org)

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