5V54 Electron Transport date Mar 13, 2017
title Crystal Structure Of 5-Ht1b Receptor In Complex With Methiot
authors W.C.Yin, X.E.Zhou, D.Yang, P.De Waal, M.T.Wang, A.Dai, X.Cai, C.Y.H P.Liu, Y.Yin, B.Liu, M.Caffrey, K.Melcher, Y.Xu, M.W.Wang, H.E.Xu,
compound source
Molecule: 5-Hydroxytryptamine Receptor 1b,Ob-1 Fused 5-Ht1b 5-Hydroxytryptamine Receptor 1b;
Chain: A, B
Fragment: Unp Residues 37-239,Unp Residues 304-390
Synonym: 5-Ht1b,S12,Serotonin 1d Beta Receptor,5-Ht-1d-Beta Receptor 1b;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens, Spodoptera Frugiperda
Organism_common: Human
Organism_taxid: 9606, 7108
Gene: Htr1b, Htr1db
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
symmetry Space Group: C 1 2 1
R_factor 0.272 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
235.200 48.830 139.220 90.00 124.07 90.00
method X-Ray Diffractionresolution 3.90 Å
ligand 89F enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (5v54.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 5V54
  • CSU: Contacts of Structural Units for 5V54
  • Structure Factors (115 Kb)
  • Retrieve 5V54 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V54 from S2C, [Save to disk]
    • View 5V54 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5V54
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v54_A] [5v54_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5V54
  • Community annotation for 5V54 at PDBWiki (http://pdbwiki.org)

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