5V84	Transcription Inhibitor	date	Mar 21, 2017
title	Cecr2 In Complex With Cpd6 (6-Allyl-N,2-Dimethyl-7-Oxo-N-(1- Phenylethyl)Piperidin-4-Yl)-6,7-Dihydro-1h-Pyrrolo[2,3-C]Py Carboxamide)
authors	J.M.Murray, J.R.Kiefer, H.Jayaran, S.Bellon, F.Boy
compound		source
Molecule: Cat Eye Syndrome Critical Region Protein 2 Chain: A, B, C, D Fragment: Unp Residues 404-518 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cecr2, Kiaa1740 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 2 2 2	R_factor 0.206 R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.184 116.488 132.930 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	96V, SO4	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	GNE-886: A Potent and Selective Inhibitor of the Cat Eye Syndrome Chromosome Region Candidate 2 Bromodomain (CECR2)., Crawford TD, Audia JE, Bellon S, Burdick DJ, Bommi-Reddy A, Cote A, Cummings RT, Duplessis M, Flynn EM, Hewitt M, Huang HR, Jayaram H, Jiang Y, Joshi S, Kiefer JR, Murray J, Nasveschuk CG, Neiss A, Pardo E, Romero FA, Sandy P, Sims RJ 3rd, Tang Y, Taylor AM, Tsui V, Wang J, Wang S, Wang Y, Xu Z, Zawadzke L, Zhu X, Albrecht BK, Magnuson SR, Cochran AG, ACS Med Chem Lett. 2017 Jun 1;8(7):737-741. doi: 10.1021/acsmedchemlett.7b00132. , eCollection 2017 Jul 13. PMID:28740608

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk] Biological Unit Coordinates (5v84.pdb1.gz) 145 Kb LPC: Ligand-Protein Contacts for 5V84 CSU: Contacts of Structural Units for 5V84 Structure Factors (638 Kb) Retrieve 5V84 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5V84 from S2C, [Save to disk] Re-refined 5v84 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5V84 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5V84

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5v84_A] [5v84_D] [5v84_C] [5v84_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5V84

Community annotation for 5V84 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---