5V8W Hydrolase date Mar 22, 2017
title Crystal Structure Of Human Integrator Ints9-Ints11 Ctd Compl
authors Y.Wu, L.Tong
compound source
Molecule: Integrator Complex Subunit 9
Chain: A, C, E, G
Fragment: C-Terminal Domain (Unp Residues 582-658)
Synonym: Int9,Protein Related To Cpsf Subunits Of 74 Kda,Rc
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ints9, Rc74
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Integrator Complex Subunit 11
Chain: B, D, F, H
Fragment: C-Terminal Domain (Unp Residues 491-600)
Synonym: Int11,Cleavage And Polyadenylation-Specific Factor Protein,Cpsf3-Like Protein,Protein Related To Cpsf Subunits Kda,Rc-68;
Ec: 3.1.27.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cpsf3l, Ints11, Rc68
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.167 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.010 67.780 98.585 90.00 100.65 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand
enzyme Hydrolase E.C.3.1.27 BRENDA
Primary referenceMolecular basis for the interaction between Integrator subunits IntS9 and IntS11 and its functional importance., Wu Y, Albrecht TR, Baillat D, Wagner EJ, Tong L, Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):4394-4399. doi:, 10.1073/pnas.1616605114. Epub 2017 Apr 10. PMID:28396433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (5v8w.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (5v8w.pdb2.gz) 64 Kb
  • Biological Unit Coordinates (5v8w.pdb3.gz) 59 Kb
  • Biological Unit Coordinates (5v8w.pdb4.gz) 65 Kb
  • CSU: Contacts of Structural Units for 5V8W
  • Structure Factors (976 Kb)
  • Retrieve 5V8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V8W from S2C, [Save to disk]
  • Re-refined 5v8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5V8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V8W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5v8w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v8w_B] [5v8w_A] [5v8w] [5v8w_F] [5v8w_G] [5v8w_H] [5v8w_D] [5v8w_C] [5v8w_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V8W
  • Community annotation for 5V8W at PDBWiki (http://pdbwiki.org)

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