5V8W Hydrolase date Mar 22, 2017
title Crystal Structure Of Human Integrator Ints9-Ints11 Ctd Compl
authors Y.Wu, L.Tong
compound source
Molecule: Integrator Complex Subunit 9
Chain: A, C, E, G
Fragment: C-Terminal Domain (Unp Residues 582-658)
Synonym: Int9,Protein Related To Cpsf Subunits Of 74 Kda,Rc
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ints9, Rc74
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Integrator Complex Subunit 11
Chain: B, D, F, H
Fragment: C-Terminal Domain (Unp Residues 491-600)
Synonym: Int11,Cleavage And Polyadenylation-Specific Factor Protein,Cpsf3-Like Protein,Protein Related To Cpsf Subunits Kda,Rc-68;
Ec: 3.1.27.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cpsf3l, Ints11, Rc68
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.167 R_Free 0.220
length a length b length c angle alpha angle beta angle gamma
63.010 67.780 98.585 90.00 100.65 90.00
method X-Ray Diffractionresolution 2.10 Å
enzyme Hydrolase E.C.3.1.27 BRENDA
A, C, G, E

Primary referenceMolecular basis for the interaction between Integrator subunits IntS9 and IntS11 and its functional importance., Wu Y, Albrecht TR, Baillat D, Wagner EJ, Tong L, Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):4394-4399. doi:, 10.1073/pnas.1616605114. Epub 2017 Apr 10. PMID:28396433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (5v8w.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (5v8w.pdb2.gz) 64 Kb
  • Biological Unit Coordinates (5v8w.pdb3.gz) 59 Kb
  • Biological Unit Coordinates (5v8w.pdb4.gz) 65 Kb
  • CSU: Contacts of Structural Units for 5V8W
  • Structure Factors (976 Kb)
  • Retrieve 5V8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V8W from S2C, [Save to disk]
  • Re-refined 5v8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5V8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V8W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5v8w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v8w_B] [5v8w_A] [5v8w] [5v8w_F] [5v8w_G] [5v8w_H] [5v8w_D] [5v8w_C] [5v8w_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V8W
  • Community annotation for 5V8W at PDBWiki (http://pdbwiki.org)

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