5VBQ Transcription Inhibitor date Mar 30, 2017
title Crystal Structure Of The First Bromodomain Of Human Brdt In With Bi2536
authors S.W.Ember, J.Y.Zhu, E.Schonbrunn
compound source
Molecule: Bromodomain Testis-Specific Protein
Chain: A, B
Fragment: Unp Residues 29-137
Synonym: Cancertestis Antigen 9,Ct9,Ring3-Like Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brdt
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.144 R_Free 0.172
length a length b length c angle alpha angle beta angle gamma
65.590 31.000 69.470 90.00 96.90 90.00
method X-Ray Diffractionresolution 1.65 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (5vbq.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (5vbq.pdb2.gz) 64 Kb
  • CSU: Contacts of Structural Units for 5VBQ
  • Structure Factors (260 Kb)
  • Retrieve 5VBQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VBQ from S2C, [Save to disk]
  • View 5VBQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VBQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5vbq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vbq_B] [5vbq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VBQ
  • Community annotation for 5VBQ at PDBWiki (http://pdbwiki.org)

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