5VE9 Protein Binding date Apr 04, 2017
title Structure Of Hacf7 Ef1-Ef2-Gar Domains
authors T.R.Lane, K.C.Slep
compound source
Molecule: Microtubule-Actin Cross-Linking Factor 1, Isoform
Chain: A, B
Fragment: Ef1-Ef2 Domains (Unp Residues 7024-7108)
Synonym: 620 Kda Actin-Binding Protein, Abp620, Actin Cross Family Protein 7, Macrophin-1, Trabeculin-Alpha, Acf7;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Macf1, Abp620, Acf7, Kiaa0465, Kiaa1251
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: Microtubule-Actin Cross-Linking Factor 1, Isoform
Chain: C
Fragment: Gar Domain (Unp Residues 7118-7191)
Synonym: 620 Kda Actin-Binding Protein, Abp620, Actin Cross Family Protein 7, Macrophin-1, Trabeculin-Alpha, Acf7;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Macf1, Abp620, Acf7, Kiaa0465, Kiaa1251
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 31 2 1
R_factor 0.256 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.984 92.984 90.446 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


Primary referenceStructure of the ACF7 EF-Hand-GAR Module and Delineation of Microtubule Binding Determinants., Lane TR, Fuchs E, Slep KC, Structure. 2017 Jul 5;25(7):1130-1138.e6. doi: 10.1016/j.str.2017.05.006. Epub, 2017 Jun 8. PMID:28602822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (5ve9.pdb1.gz) 132 Kb
  • CSU: Contacts of Structural Units for 5VE9
  • Structure Factors (82 Kb)
  • Retrieve 5VE9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VE9 from S2C, [Save to disk]
  • Re-refined 5ve9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5VE9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VE9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ve9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ve9_B] [5ve9_C] [5ve9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VE9
  • Community annotation for 5VE9 at PDBWiki (http://pdbwiki.org)

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