5VEU Oxidoreductase Oxidoreductase Inhibitor date Apr 05, 2017
title Human Cytochrome P450 3a5 (Cyp3a5)
authors M.H.Hsu, E.F.Johnson
compound source
Molecule: Cytochrome P450 3a5
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Unp Residues 24-497
Synonym: Cypiiia5,Cytochrome P450 Hlp2,Cytochrome P450-Pcn3
Ec: 1.14.14.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp3a5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh-5a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcwori
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.988 198.384 234.881 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.91 Å
ligand
enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
subcellular loc. Membrane localization by OPM: Endoplasmic reticulum membrane
luminal side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceThe X-ray Crystal Structure of the Human Monooxygenase Cytochrome P450 3A5-Ritonavir Complex Reveals Active Site Differences between P450s 3A4 and 3A5., Hsu MH, Savas U, Johnson EF, Mol Pharmacol. 2017 Nov 1. pii: mol.117.109744. doi: 10.1124/mol.117.109744. PMID:29093019
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (916 Kb) [Save to disk]
  • Biological Unit Coordinates (5veu.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (5veu.pdb2.gz) 86 Kb
  • Biological Unit Coordinates (5veu.pdb3.gz) 86 Kb
  • Biological Unit Coordinates (5veu.pdb4.gz) 85 Kb
  • Biological Unit Coordinates (5veu.pdb5.gz) 83 Kb
  • Biological Unit Coordinates (5veu.pdb6.gz) 85 Kb
  • Biological Unit Coordinates (5veu.pdb7.gz) 84 Kb
  • Biological Unit Coordinates (5veu.pdb8.gz) 86 Kb
  • Biological Unit Coordinates (5veu.pdb9.gz) 86 Kb
  • CSU: Contacts of Structural Units for 5VEU
  • Structure Factors (2623 Kb)
  • Retrieve 5VEU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VEU from S2C, [Save to disk]
  • View 5VEU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VEU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5veu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5veu_H] [5veu_J] [5veu_G] [5veu_B] [5veu_C] [5veu_F] [5veu_K] [5veu_E] [5veu_L] [5veu_D] [5veu_A] [5veu_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VEU
  • Community annotation for 5VEU at PDBWiki (http://pdbwiki.org)

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