5VGJ		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BMA, MAN, NAG	enzyme
Gene Ontology	Chain Function Process Component G
Primary reference	Virus-like Particles Identify an HIV V1V2 Apex-Binding Neutralizing Antibody that Lacks a Protruding Loop., Cale EM, Gorman J, Radakovich NA, Crooks ET, Osawa K, Tong T, Li J, Nagarajan R, Ozorowski G, Ambrozak DR, Asokan M, Bailer RT, Bennici AK, Chen X, Doria-Rose NA, Druz A, Feng Y, Joyce MG, Louder MK, O'Dell S, Oliver C, Pancera M, Connors M, Hope TJ, Kepler TB, Wyatt RT, Ward AB, Georgiev IS, Kwong PD, Mascola JR, Binley JM, Immunity. 2017 May 16;46(5):777-791.e10. doi: 10.1016/j.immuni.2017.04.011. PMID:28514685

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (5vgj.pdb1.gz) 97 Kb LPC: Ligand-Protein Contacts for 5VGJ CSU: Contacts of Structural Units for 5VGJ Structure Factors (244 Kb) Retrieve 5VGJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VGJ from S2C, [Save to disk] Re-refined 5vgj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5VGJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vgj_G] [5vgj_H] [5vgj_L] SWISS-PROT database:

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