OCA Atlas for 5VJX

5VJX

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MSE

enzyme

Gene
Ontology

Chain	Function	Process	Component
d, J, X, G, a, D, A, R, M, U

Primary reference

Crystal Structure of the CLOCK Transactivation Domain Exon19 in Complex with a Repressor., Hou Z, Su L, Pei J, Grishin NV, Zhang H, Structure. 2017 Aug 1;25(8):1187-1194.e3. doi: 10.1016/j.str.2017.05.023. Epub, 2017 Jun 29. PMID:28669630

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]

Biological Unit Coordinates (5vjx.pdb1.gz) 48 Kb

Biological Unit Coordinates (5vjx.pdb2.gz) 55 Kb

Biological Unit Coordinates (5vjx.pdb3.gz) 57 Kb

Biological Unit Coordinates (5vjx.pdb4.gz) 56 Kb

Biological Unit Coordinates (5vjx.pdb5.gz) 51 Kb

LPC: Ligand-Protein Contacts for 5VJX

CSU: Contacts of Structural Units for 5VJX

Structure Factors (2217 Kb)

Retrieve 5VJX in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5VJX from S2C, [Save to disk]

View 5VJX in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vjx_A] [5vjx_B] [5vjx_C] [5vjx_D] [5vjx_E] [5vjx_F] [5vjx_G] [5vjx_H] [5vjx_I] [5vjx_J] [5vjx_K] [5vjx_L] [5vjx_M] [5vjx_N] [5vjx_O] [5vjx_R] [5vjx_S] [5vjx_T] [5vjx_U] [5vjx_V] [5vjx_W] [5vjx_X] [5vjx_Y] [5vjx_Z] [5vjx_a] [5vjx_b] [5vjx_c] [5vjx_d] [5vjx_e] [5vjx_f]

SWISS-PROT database:

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