5VN3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B, D


C, F, E


G, I, J


Primary referenceOpen and closed structures reveal allostery and pliability in the HIV-1 envelope spike., Ozorowski G, Pallesen J, de Val N, Lyumkis D, Cottrell CA, Torres JL, Copps J, Stanfield RL, Cupo A, Pugach P, Moore JP, Wilson IA, Ward AB, Nature. 2017 Jul 20;547(7663):360-363. doi: 10.1038/nature23010. Epub 2017 Jul, 12. PMID:28700571
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (446 Kb) [Save to disk]
  • Biological Unit Coordinates (5vn3.pdb1.gz) 425 Kb
  • LPC: Ligand-Protein Contacts for 5VN3
  • CSU: Contacts of Structural Units for 5VN3
  • Retrieve 5VN3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VN3 from S2C, [Save to disk]
    • View 5VN3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vn3_A] [5vn3_B] [5vn3_C] [5vn3_D] [5vn3_E] [5vn3_F] [5vn3_G] [5vn3_H] [5vn3_I] [5vn3_J] [5vn3_K] [5vn3_L] [5vn3_M] [5vn3_N] [5vn3_O]
  • SWISS-PROT database:

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