5VNB	Transcription	date	Apr 29, 2017
title	Yeats In Complex With Histone H3
authors	H.J.Cho, T.Cierpicki
compound		source
Molecule: Yeats Domain-Containing Protein 4 Chain: A, B, C, D Fragment: Unp Residues 1-148 Synonym: Glioma-Amplified Sequence 41,Gas41,Numa-Binding Pr Nubi1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Yeats4, Gas41 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgst-Parallel
Molecule: H3k23ack27ac Peptide Chain: K Engineered: Yes Other_details: Histone H3 H3k23ack27ac Peptide Aly-Acetylat Modification On Lys Residue L-Peptide Linking		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.186 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.790 80.305 121.663 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ALY, EDO, SO4	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	GAS41 Recognizes Diacetylated Histone H3 through a Bivalent Binding Mode., Cho HJ, Li H, Linhares BM, Kim E, Ndoj J, Miao H, Grembecka J, Cierpicki T, ACS Chem Biol. 2018 Aug 17. doi: 10.1021/acschembio.8b00674. PMID:30071723

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk] Biological Unit Coordinates (5vnb.pdb1.gz) 24 Kb Biological Unit Coordinates (5vnb.pdb2.gz) 25 Kb Biological Unit Coordinates (5vnb.pdb3.gz) 23 Kb Biological Unit Coordinates (5vnb.pdb4.gz) 24 Kb LPC: Ligand-Protein Contacts for 5VNB CSU: Contacts of Structural Units for 5VNB Structure Factors (777 Kb) Retrieve 5VNB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VNB from S2C, [Save to disk]

View 5VNB in 3D

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Visual 3D analysis of 5VNB

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vnb_D] [5vnb_K] [5vnb_A] [5vnb_B] [5vnb_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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