5VOK Signaling Protein date May 03, 2017
title Crystal Structure Of The C7orf59-Hbxip Dimer
authors N.Rasheed, A.F.Z.Nascimento, L.Bar-Peled, K.Shen, D.M.Sabatini, R.Aparicio, J.H.C.Smetana
compound source
Molecule: Ragulator Complex Protein Lamtor5
Chain: A, C, E, G
Synonym: Hepatitis B Virus X-Interacting Protein,Hbx-Intera Protein,Late Endosomallysosomal Adaptor And Mapk And Mtor 5;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor5, Hbxip, Xip
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacyc-Duet

Molecule: Ragulator Complex Protein Lamtor4
Chain: B, D, F, H
Synonym: Late Endosomallysosomal Adaptor And Mapk And Mtor 4;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor4, C7orf59
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacyc-Duet
symmetry Space Group: C 1 2 1
R_factor 0.280 R_Free 0.312
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.884 64.763 79.231 90.00 115.18 90.00
method X-Ray Diffractionresolution 2.89 Å
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (5vok.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (5vok.pdb2.gz) 56 Kb
  • Biological Unit Coordinates (5vok.pdb3.gz) 61 Kb
  • Biological Unit Coordinates (5vok.pdb4.gz) 57 Kb
  • Biological Unit Coordinates (5vok.pdb5.gz) 116 Kb
  • Biological Unit Coordinates (5vok.pdb6.gz) 115 Kb
  • CSU: Contacts of Structural Units for 5VOK
  • Structure Factors (493 Kb)
  • Retrieve 5VOK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VOK from S2C, [Save to disk]
  • View 5VOK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VOK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5vok from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vok_D] [5vok_C] [5vok_F] [5vok_G] [5vok_B] [5vok_H] [5vok_E] [5vok_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VOK
  • Community annotation for 5VOK at PDBWiki (http://pdbwiki.org)

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