5VQP Cytokine date May 09, 2017
title Crystal Structure Of Human Pro-Tgf-Beta1
authors B.Zhao, S.Xu, X.Dong, C.Lu, T.A.Springer
compound source
Molecule: Transforming Growth Factor Beta-1
Chain: A
Synonym: Tgf-Beta-1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfb1, Tgfb
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_cell_line: Cho-Lec 3.2.8.1
symmetry Space Group: P 6 2 2
R_factor 0.252 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.390 104.390 141.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand BMA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • positive regulation of cellu...
  • positive regulation of colla...
  • cellular response to transfo...

  • Primary referenceProdomain-Growth Factor Swapping in the Structure of pro-TGF-beta1., Zhao B, Xu S, Dong X, Lu C, Springer TA, J Biol Chem. 2017 Nov 5. pii: jbc.M117.809657. doi: 10.1074/jbc.M117.809657. PMID:29109152
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (5vqp.pdb1.gz) 221 Kb
  • LPC: Ligand-Protein Contacts for 5VQP
  • CSU: Contacts of Structural Units for 5VQP
  • Structure Factors (89 Kb)
  • Retrieve 5VQP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VQP from S2C, [Save to disk]
  • View 5VQP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VQP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vqp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VQP
  • Community annotation for 5VQP at PDBWiki (http://pdbwiki.org)

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