5VRP Hydrolase Hydrolase Inhibitor date May 11, 2017
title Crystal Structure Of Human Renin In Complex With A Biphenylpipderidinylcarbinol
authors N.Concha, B.Zhao
compound source
Molecule: Renin
Chain: A, B
Fragment: Unp Residues 70-406
Synonym: Angiotensinogenase
Ec: 3.4.23.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ren
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek-F
symmetry Space Group: P 21 21 21
R_factor 0.246 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.334 99.933 146.529 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.22 Å
ligand 9JD, NAG, SO4 enzyme Hydrolase E.C.3.4.23.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of renin inhibitors containing a simple aspartate binding moiety that imparts reduced P450 inhibition., Lawhorn BG, Tran T, Hong VS, Morgan LA, Le BT, Harpel MR, Jolivette L, Diaz E, Schwartz B, Gross JW, Tomaszek T, Semus S, Concha N, Smallwood A, Holt DA, Kallander LS, Bioorg Med Chem Lett. 2017 Sep 23. pii: S0960-894X(17)30954-X. doi:, 10.1016/j.bmcl.2017.09.046. PMID:28985999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (5vrp.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (5vrp.pdb2.gz) 107 Kb
  • Biological Unit Coordinates (5vrp.pdb3.gz) 209 Kb
  • LPC: Ligand-Protein Contacts for 5VRP
  • CSU: Contacts of Structural Units for 5VRP
  • Structure Factors (374 Kb)
  • Retrieve 5VRP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VRP from S2C, [Save to disk]
  • View 5VRP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VRP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vrp_B] [5vrp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VRP
  • Community annotation for 5VRP at PDBWiki (http://pdbwiki.org)

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