5VXO	Lyase	date	May 23, 2017
title	Crystal Structure Analysis Of Human Clybl In Complex With Pr Coa
authors	H.Shen
compound		source
Molecule: Citrate Lyase Subunit Beta-Like Protein, Mitochon Chain: A, B, C Fragment: Unp Residues 30-340 Synonym: Citrate Lyase Beta-Like,Beta-Methylmalate Synthase Synthase; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Clybl, Clb Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a
symmetry	Space Group: P 1 21 1	R_factor 0.174 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.589 131.841 82.440 90.00 93.05 90.00
method	X-Ray Diffraction	resolution	2.27 Å
ligand	1VU, EDO, PEG, PG4, PGE, PO4	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	The Human Knockout Gene CLYBL Connects Itaconate to Vitamin B12., Shen H, Campanello GC, Flicker D, Grabarek Z, Hu J, Luo C, Banerjee R, Mootha VK, Cell. 2017 Nov 2;171(4):771-782.e11. doi: 10.1016/j.cell.2017.09.051. Epub 2017, Oct 19. PMID:29056341

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk] Biological Unit Coordinates (5vxo.pdb1.gz) 154 Kb LPC: Ligand-Protein Contacts for 5VXO CSU: Contacts of Structural Units for 5VXO Structure Factors (2018 Kb) Retrieve 5VXO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VXO from S2C, [Save to disk]

View 5VXO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VXO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vxo_C] [5vxo_B] [5vxo_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5VXO

Community annotation for 5VXO at PDBWiki (http://pdbwiki.org)

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