5VY2	Hydrolase	date	May 24, 2017
title	Crystal Structure Of The F36a Mutant Of Hsnudt16
authors	P.Thirawatananond, S.B.Gabelli
compound		source
Molecule: U8 Snorna-Decapping Enzyme Chain: A, B Synonym: Idp Phosphatase,Idpase,Inosine Diphosphate Phospha Nucleoside Diphosphate-Linked Moiety X Motif 16,Nudix Motif Snorna-Binding Protein H29k,M7gpppn-Mrna Hydrolase; Ec: 3.6.1.62,3.6.1.64 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nudt16 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Codon Plus Ripl Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 1 21 1	R_factor 0.189 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.202 49.589 64.284 90.00 114.59 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	NA	enzyme	Hydrolase E.C.3.6.1.62 BRENDA
Gene Ontology	Chain Function Process Component A, B metalloexopeptidase activity... nucleotide phosphatase activ... IDP phosphatase activity
Primary reference	Structural analyses of NudT16-ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins., Thirawatananond P, McPherson RL, Malhi J, Nathan S, Lambrecht MJ, Brichacek M, Hergenrother PJ, Leung AKL, Gabelli SB, Sci Rep. 2019 Apr 11;9(1):5940. doi: 10.1038/s41598-019-39491-w. PMID:30976021

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (5vy2.pdb1.gz) 59 Kb LPC: Ligand-Protein Contacts for 5VY2 CSU: Contacts of Structural Units for 5VY2 Structure Factors (343 Kb) Retrieve 5VY2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VY2 from S2C, [Save to disk]

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vy2_A] [5vy2_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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