5W0P Signaling Protein date May 31, 2017
title Crystal Structure Of Rhodopsin Bound To Visual Arrestin Dete X-Ray Free Electron Laser
authors X.E.Zhou, Y.He, P.W.De Waal, X.Gao, Y.Kang, N.Van Eps, Y.Yin, K.Pal D.Goswami, T.A.White, A.Barty, N.R.Latorraca, H.N.Chapman, W.L.H R.O.Dror, R.C.Stevens, V.Cherezov, V.V.Gurevich, P.R.Griffin, O. K.Melcher, H.E.Xu
compound source
Molecule: Endolysin,Rhodopsin,S-Arrestin
Chain: A, B
Synonym: Lysis Protein,Lysozyme,Muramidase,Opsin-2,48 Kda P Retinal S-Antigen,S-Ag,Rod Photoreceptor Arrestin;
Ec: 3.2.1.17
Engineered: Yes
Organism_scientific: Enterobacteria Phage Rb55, Homo Sapien Musculus;
Organism_common: Human, Mouse
Organism_taxid: 697289, 9606, 10090
Gene: E, Rb55_p125, Rho, Opn2, Sag
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Endolysin,Rhodopsin,S-Arrestin
Chain: C, D
Synonym: Lysis Protein,Lysozyme,Muramidase,Opsin-2,48 Kda P Retinal S-Antigen,S-Ag,Rod Photoreceptor Arrestin;
Ec: 3.2.1.17
Engineered: Yes

Organism_scientific: Enterobacteria Phage Rb55, Homo Sapien Musculus;
Organism_common: Human, Mouse
Organism_taxid: 697289, 9606, 10090
Gene: E, Rb55_p125, Rho, Opn2, Sag
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.234 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.240 109.240 452.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.01 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceIdentification of Phosphorylation Codes for Arrestin Recruitment by G Protein-Coupled Receptors., Zhou XE, He Y, de Waal PW, Gao X, Kang Y, Van Eps N, Yin Y, Pal K, Goswami D, White TA, Barty A, Latorraca NR, Chapman HN, Hubbell WL, Dror RO, Stevens RC, Cherezov V, Gurevich VV, Griffin PR, Ernst OP, Melcher K, Xu HE, Cell. 2017 Jul 27;170(3):457-469.e13. doi: 10.1016/j.cell.2017.07.002. PMID:28753425
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1143 Kb) [Save to disk]
  • Biological Unit Coordinates (5w0p.pdb1.gz) 299 Kb
  • Biological Unit Coordinates (5w0p.pdb2.gz) 285 Kb
  • Biological Unit Coordinates (5w0p.pdb3.gz) 299 Kb
  • Biological Unit Coordinates (5w0p.pdb4.gz) 272 Kb
  • CSU: Contacts of Structural Units for 5W0P
  • Structure Factors (1811 Kb)
  • Retrieve 5W0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W0P from S2C, [Save to disk]
  • View 5W0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W0P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5w0p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w0p_B] [5w0p_A] [5w0p_C] [5w0p_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W0P
  • Community annotation for 5W0P at PDBWiki (http://pdbwiki.org)

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