5W1J Signaling Protein date Jun 03, 2017
title Echinococcus Granulosus Thioredoxin Glutathione Reductas (Eg
authors W.Gao, Y.Wang, S.Dai
compound source
Molecule: Thioredoxin Glutathione Reductase
Chain: A, B
Fragment: Unp Residues 34-617
Engineered: Yes
 Organism_scientific: Echinococcus Granulosus
Organism_common: Hydatid Tapeworm
Organism_taxid: 6210
Gene: Tgr
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 43 21 2
R_factor 0.197 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.740 108.740 257.064 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand FAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • thioredoxin-disulfide reduct...
  • electron transfer activity


    • Primary referenceThe Enzymatic and Structural Basis for Inhibition of Echinococcus granulosus Thioredoxin Glutathione Reductase by Gold(I)., Salinas G, Gao W, Wang Y, Bonilla M, Yu L, Novikov A, Virginio VG, Ferreira HB, Vieites M, Gladyshev VN, Gambino D, Dai S, Antioxid Redox Signal. 2017 Dec 20;27(18):1491-1504. doi: 10.1089/ars.2016.6816. , Epub 2017 Jun 26. PMID:28463568
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (391 Kb) [Save to disk]
  • Biological Unit Coordinates (5w1j.pdb1.gz) 384 Kb
  • LPC: Ligand-Protein Contacts for 5W1J
  • CSU: Contacts of Structural Units for 5W1J
  • Structure Factors (940 Kb)
  • Retrieve 5W1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W1J from S2C, [Save to disk]
    • View 5W1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5W1J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w1j_A] [5w1j_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5W1J
  • Community annotation for 5W1J at PDBWiki (http://pdbwiki.org)

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