5W1R Dna Binding Protein date Jun 04, 2017
title Cryo-Em Structure Of Dnapkcs
authors H.Sharif, Y.Li, H.Wu
compound source
Molecule: Dna-Dependent Protein Kinase Catalytic Subunit
Chain: A
Synonym: Dna-Pkcs,Dnpk1,P460
Ec: 2.7.11.1
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela S3
Atcc: Ccl-2.2
Organ: Cervix
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCryo-EM structure of the DNA-PK holoenzyme., Sharif H, Li Y, Dong Y, Dong L, Wang WL, Mao Y, Wu H, Proc Natl Acad Sci U S A. 2017 Jul 11;114(28):7367-7372. doi:, 10.1073/pnas.1707386114. Epub 2017 Jun 26. PMID:28652322
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (480 Kb) [Save to disk]
  • Biological Unit Coordinates (5w1r.pdb1.gz) 467 Kb
  • CSU: Contacts of Structural Units for 5W1R
  • Retrieve 5W1R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W1R from S2C, [Save to disk]
    • View 5W1R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5W1R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w1r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5W1R
  • Community annotation for 5W1R at PDBWiki (http://pdbwiki.org)

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