5W3J Hydrolase date Jun 07, 2017
title Yeast Microtubule Stabilized With Taxol Assembled From Mutat
authors S.C.Howes, E.A.Geyer, B.Lafrance, R.Zhang, E.H.Kellogg, S.Westerm L.M.Rice, E.Nogales
compound source
Molecule: Tubulin Alpha-1 Chain
Chain: A
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Expression_system: Saccharomyces Cerevisiae (Strain Atcc 20 S288c);
Expression_system_taxid: 559292

Molecule: Tubulin Beta Chain
Chain: B
Synonym: Beta-Tubulin
Engineered: Yes
Mutation: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Expression_system: Saccharomyces Cerevisiae (Strain Atcc 20 S288c);
Expression_system_taxid: 559292
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
ligand GDP, GTP, MG, TA1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A

  • tubulin complex
    • B

  • tubulin complex
    • Primary referenceStructural differences between yeast and mammalian microtubules revealed by cryo-EM., Howes SC, Geyer EA, LaFrance B, Zhang R, Kellogg EH, Westermann S, Rice LM, Nogales E, J Cell Biol. 2017 Sep 4;216(9):2669-2677. doi: 10.1083/jcb.201612195. Epub 2017, Jun 26. PMID:28652389
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5w3j.pdb1.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 5W3J
  • CSU: Contacts of Structural Units for 5W3J
  • Retrieve 5W3J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W3J from S2C, [Save to disk]
    • View 5W3J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5W3J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w3j_B] [5w3j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5W3J
  • Community annotation for 5W3J at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science