5W7I Protein Binding date Jun 20, 2017
title X-Ray Structure Of Ankyrin Repeat Domain Of Dhhc17 In Comple Snap25b Peptide
authors R.Verardi, J.S.Kim, R.Ghirlando, A.Banerjee
compound source
Molecule: Palmitoyltransferase Zdhhc17
Chain: A, C
Synonym: Huntingtin Yeast Partner H,Huntingtin-Interacting 14,Hip-14,Huntingtin-Interacting Protein 3,Hip-3,Huntingtin Interacting Protein H,Putative Mapk-Activating Protein Pm11 Nf-Kappa-B-Activating Protein 205,Zinc Finger Dhhc Domain-C Protein 17,Dhhc-17;
Ec: 2.3.1.225
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zdhhc17, Hip14, Hip3, Hyph, Kiaa0946, Hspc294
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Snap25b-111-120
Chain: B, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 64
R_factor 0.176 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.187 88.187 127.969 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.11 Å
ligand
enzyme Transferase E.C.2.3.1.225 BRENDA
Primary referenceStructural Basis for Substrate Recognition by the Ankyrin Repeat Domain of Human DHHC17 Palmitoyltransferase., Verardi R, Kim JS, Ghirlando R, Banerjee A, Structure. 2017 Jul 18. pii: S0969-2126(17)30214-9. doi:, 10.1016/j.str.2017.06.018. PMID:28757145
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (5w7i.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (5w7i.pdb2.gz) 40 Kb
  • CSU: Contacts of Structural Units for 5W7I
  • Structure Factors (820 Kb)
  • Retrieve 5W7I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W7I from S2C, [Save to disk]
  • View 5W7I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W7I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5w7i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w7i_A] [5w7i_D] [5w7i_C] [5w7i_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W7I
  • Community annotation for 5W7I at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science