5WDI Hydrolase date Jul 05, 2017
title Structure Of Human Sts-2 Histidine Phosphatase Domain
authors W.Zhou, Y.Yin, A.W.Weinheimer, N.Kaur, N.Carpino, J.B.French
compound source
Molecule: Ubiquitin-Associated And Sh3 Domain-Containing Pr
Chain: A, B
Synonym: Cbl-Interacting Protein 4,Clip4,Suppressor Of T-Ce Receptor Signaling 2,Sts-2,T-Cell Ubiquitin Ligand 1,Tula-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubash3a, Sts2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.204 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.507 113.115 60.994 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.43 Å
ligand SO4 enzyme
Primary referenceStructural and functional characterization of the histidine phosphatase domains of human Sts-1 and Sts-2., Zhou W, Yin Y, Weinheimer AS, Kaur N, Carpino N, French JB, Biochemistry. 2017 Jul 31. doi: 10.1021/acs.biochem.7b00638. PMID:28759203
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (5wdi.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (5wdi.pdb2.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 5WDI
  • CSU: Contacts of Structural Units for 5WDI
  • Structure Factors (283 Kb)
  • Retrieve 5WDI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WDI from S2C, [Save to disk]
  • View 5WDI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WDI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wdi_A] [5wdi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WDI
  • Community annotation for 5WDI at PDBWiki (http://pdbwiki.org)

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