5WDY Transferase date Jul 06, 2017
title Crystal Structure Of Wnk1 In Complex With 1-Cyclohexyl-N-({6 [2-(3-Methoxyphenyl)Pyridin-4-Yl]-1h-Indol-3-Yl}Methyl)Meth (Compound 6)
authors X.Xie, D.Kohls
compound source
Molecule: Serinethreonine-Protein Kinase Wnk1
Chain: A, B
Fragment: Unp Residues 206-483
Synonym: Erythrocyte 65 Kda Protein, P65, Kinase Deficient Protein Kinase Lysine-Deficient 1, Protein Kinase With No L Hwnk1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wnk1, Hsn2, Kdp, Kiaa0344, Prkwnk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.228 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.334 62.267 70.268 67.13 77.42 74.74
method X-Ray Diffractionresolution 2.46 Å
ligand A6S, ANP, MN enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOptimization of Allosteric With-No-Lysine (WNK) Kinase Inhibitors and Efficacy in Rodent Hypertension Models., Yamada K, Levell J, Yoon T, Kohls D, Yowe D, Rigel DF, Imase H, Yuan J, Yasoshima K, DiPetrillo K, Monovich L, Xu L, Zhu M, Kato M, Jain M, Idamakanti N, Taslimi P, Kawanami T, Argikar UA, Kunjathoor V, Xie X, Yagi YI, Iwaki Y, Robinson Z, Park HM, J Med Chem. 2017 Aug 3. doi: 10.1021/acs.jmedchem.7b00708. PMID:28771350
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5wdy.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (5wdy.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 5WDY
  • CSU: Contacts of Structural Units for 5WDY
  • Structure Factors (193 Kb)
  • Retrieve 5WDY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WDY from S2C, [Save to disk]
  • View 5WDY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WDY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wdy_B] [5wdy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WDY
  • Community annotation for 5WDY at PDBWiki (http://pdbwiki.org)

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