5WER	Immune System	date	Jul 10, 2017
title	Crystal Structure Of Tapbpr And H2-Dd Complex
authors	J.S.Jiang, K.Natarajan, L.F.Boyd, D.H.Margulies
compound		source
Molecule: H-2 Class I Histocompatibility Antigen, D-D Alpha Chain: A, D, G, J Fragment: Residues 26-301 Synonym: H-2d(D) Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: H2-D1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21-B
Molecule: Beta-2-Microglobulin Chain: B, E, H, K Fragment: Residues 21-119 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m, Cdabp0092, Hdcma22p Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a
Molecule: Tap Binding Protein Related Chain: C, F, I, L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Drosophila Acanthoptera Expression_system_taxid: 51166 Expression_system_strain: S2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmt_v5_his
symmetry	Space Group: P 31	R_factor 0.239 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 169.050 169.050 139.410 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.41 Å
ligand	1PE, CIT, EDO, GOL	enzyme
Gene Ontology	Chain Function Process Component H, K, E, B cellular response to iron io...
Primary reference	Crystal structure of a TAPBPR-MHC-I complex reveals the mechanism of peptide editing in antigen presentation., Jiang J, Natarajan K, Boyd LF, Morozov GI, Mage MG, Margulies DH, Science. 2017 Oct 12. pii: eaao5154. doi: 10.1126/science.aao5154. PMID:29025991

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (426 Kb) [Save to disk] Biological Unit Coordinates (5wer.pdb1.gz) 113 Kb Biological Unit Coordinates (5wer.pdb2.gz) 107 Kb Biological Unit Coordinates (5wer.pdb3.gz) 106 Kb Biological Unit Coordinates (5wer.pdb4.gz) 111 Kb LPC: Ligand-Protein Contacts for 5WER CSU: Contacts of Structural Units for 5WER Structure Factors (574 Kb) Retrieve 5WER in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WER from S2C, [Save to disk]

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wer_B] [5wer_G] [5wer_H] [5wer_E] [5wer_A] [5wer_F] [5wer_J] [5wer_L] [5wer_K] [5wer_D] [5wer_C] [5wer_I] SWISS-PROT database: Domain organization of by SWISSPFAM

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