5WIR	Dna Binding Protein	date	Jul 20, 2017
title	Structure Of The Trf1-Terb1 Interface
authors	J.Nandakumar, D.F.Pendlebury, E.M.Smith, V.M.Tesmer
compound		source
Molecule: Terb1-Tbm Chain: D, C Engineered: Yes Other_details: The N-Terminal Serine Remains After Cleavage Purification Tag.;		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Telomeric Repeat-Binding Factor 1 Chain: B, A Synonym: Nima-Interacting Protein 2,Ttaggg Repeat-Binding F Telomeric Protein Pin2trf1; Engineered: Yes Other_details: The N-Terminal Serine Remains After Cleavage Purification Tag.		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Terf1, Pin2, Trbf1, Trf, Trf1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 64	R_factor 0.179 R_Free 0.210
crystal cell	length a length b length c angle alpha angle beta angle gamma 161.720 161.720 45.170 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Dissecting the telomere-inner nuclear membrane interface formed in meiosis., Pendlebury DF, Fujiwara Y, Tesmer VM, Smith EM, Shibuya H, Watanabe Y, Nandakumar J, Nat Struct Mol Biol. 2017 Oct 30. doi: 10.1038/nsmb.3493. PMID:29083414

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (5wir.pdb1.gz) 75 Kb CSU: Contacts of Structural Units for 5WIR Structure Factors (1858 Kb) Retrieve 5WIR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WIR from S2C, [Save to disk]

View 5WIR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5WIR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wir_C] [5wir_A] [5wir_B] [5wir_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5WIR

Community annotation for 5WIR at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---