5WK3 Immune System date Jul 24, 2017
title Crystal Structure Of The Complex Between Ccl17 And M116 Fab
authors A.Teplyakov, G.Obmolova, G.L.Gilliland
compound source
Molecule: M116 Light Chain
Chain: P, R, T, V
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: M116 Heavy Chain
Chain: Q, S, U, W
Fragment: Fd
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: C-C Motif Chemokine 17
Chain: A, B, C, D
Fragment: Unp Residues 24-94
Synonym: Cc Chemokine Tarc,Small-Inducible Cytokine A17,Thy Activation-Regulated Chemokine;
Engineered: Yes
Other_details: G7t Mutant Of Human Ccl17

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccl17, Scya17, Tarc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.180 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.510 81.930 130.500 93.96 99.21 104.19
method X-Ray Diffractionresolution 1.90 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural insights into chemokine CCL17 recognition by antibody M116., Teplyakov A, Obmolova G, Gilliland GL, Biochem Biophys Rep. 2017 Dec 9;13:27-31. doi: 10.1016/j.bbrep.2017.11.005., eCollection 2018 Mar. PMID:29264403
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (329 Kb) [Save to disk]
  • Biological Unit Coordinates (5wk3.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (5wk3.pdb2.gz) 86 Kb
  • Biological Unit Coordinates (5wk3.pdb3.gz) 86 Kb
  • Biological Unit Coordinates (5wk3.pdb4.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 5WK3
  • CSU: Contacts of Structural Units for 5WK3
  • Structure Factors (1556 Kb)
  • Retrieve 5WK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WK3 from S2C, [Save to disk]
  • View 5WK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WK3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wk3_B] [5wk3_R] [5wk3_U] [5wk3_W] [5wk3_C] [5wk3_T] [5wk3_S] [5wk3_D] [5wk3_P] [5wk3_A] [5wk3_Q] [5wk3_V]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WK3
  • Community annotation for 5WK3 at PDBWiki (http://pdbwiki.org)

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