5WM1	Transferase Dna	date	Jul 28, 2017
title	Structure Of The 10s (+)-Trans-Bp-Dg Modified Rev1 Ternary C
authors	O.Rechkoblit, A.Kolbanovsky, H.Landes, N.E.Geacintov, A.K.Aggarw
compound		source
Molecule: Dna (5'-D(Gpgpgpgptpgptpgpgptpap(Ddg) Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'- D(Paptpcpgpcptpapcpcpapcpapcpcpcpc)-3'); Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna Repair Protein Rev1 Chain: A Synonym: Reversionless Protein 1 Ec: 2.7.7.- Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rev1, Yor346w, O6339 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus
symmetry	Space Group: P 21 21 21	R_factor 0.170 R_Free 0.206
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.002 64.879 130.652 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	BAP, DCP, DDG, EDO, GOL, MG, PEG	enzyme	Transferase E.C.2.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Mechanism of error-free replication across benzo[a]pyrene stereoisomers by Rev1 DNA polymerase., Rechkoblit O, Kolbanovskiy A, Landes H, Geacintov NE, Aggarwal AK, Nat Commun. 2017 Oct 17;8(1):965. doi: 10.1038/s41467-017-01013-5. PMID:29042535

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (5wm1.pdb1.gz) 91 Kb LPC: Ligand-Protein Contacts for 5WM1 CSU: Contacts of Structural Units for 5WM1 Structure Factors (1307 Kb) Retrieve 5WM1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WM1 from S2C, [Save to disk]

View 5WM1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5WM1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wm1_T] [5wm1_A] [5wm1_P] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5WM1

Community annotation for 5WM1 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---