5WP6 Cryo-EM structure of a human TRPM4 channel in complex with calcium and decavanadate date
authors Winkler, P.A., Huang, Y., Sun, W., Du, J., Lu, W.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.80
ligand DVT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceElectron cryo-microscopy structure of a human TRPM4 channel., Winkler PA, Huang Y, Sun W, Du J, Lu W, Nature. 2017 Dec 14;552(7684):200-204. doi: 10.1038/nature24674. Epub 2017 Dec 6. PMID:29211723
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (531 Kb) [Save to disk]
  • Biological Unit Coordinates (5wp6.pdb1.gz) 519 Kb
  • LPC: Ligand-Protein Contacts for 5WP6
  • CSU: Contacts of Structural Units for 5WP6
  • Retrieve 5WP6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WP6 from S2C, [Save to disk]
  • View 5WP6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WP6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wp6_D] [5wp6_C] [5wp6_B] [5wp6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WP6
  • Community annotation for 5WP6 at PDBWiki (http://pdbwiki.org)

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