5WPA Nuclear Protein date Aug 04, 2017
title Structure Of Human Sfpqpspc1 Heterodimer
authors M.Lee
compound source
Molecule: Splicing Factor, Proline- And Glutamine-Rich
Chain: A
Synonym: 100 Kda Dna-Pairing Protein, Hpomp100, Dna-Binding Complex, 100 Kda Subunit, Polypyrimidine Tract-Binding Prot Associated-Splicing Factor, Ptb-Associated-Splicing Factor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sfpq, Psf
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Rosetta2 (De3)

Molecule: Paraspeckle Component 1
Chain: B
Synonym: Paraspeckle Protein 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pspc1, Psp1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Rosetta2 (De3)
symmetry Space Group: C 1 2 1
R_factor 0.219 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.229 67.841 92.204 90.00 95.06 90.00
method X-Ray Diffractionresolution 2.29 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a SFPQ/PSPC1 heterodimer provides insights into preferential heterodimerization of human DBHS family proteins., Huang J, Casas Garcia GP, Perugini MA, Fox A, Bond C, Lee M, J Biol Chem. 2018 Mar 12. pii: RA117.001451. doi: 10.1074/jbc.RA117.001451. PMID:29530979
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (5wpa.pdb1.gz) 80 Kb
  • CSU: Contacts of Structural Units for 5WPA
  • Structure Factors (1133 Kb)
  • Retrieve 5WPA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WPA from S2C, [Save to disk]
  • View 5WPA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WPA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wpa_B] [5wpa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WPA
  • Community annotation for 5WPA at PDBWiki (http://pdbwiki.org)

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