5WPK Oxidoreductase date Aug 04, 2017
title Structure Of The Class II 3-Hydroxy-3-Methylglutaryl-Coa Red From Streptococcus Pneumoniae Bound To Hmg-Coa And In A Par Closed Conformation
authors B.R.Miller, Y.Kung
compound source
Molecule: 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase
Chain: A, B
Synonym: Hmg-Coa Reductase
Ec: 1.1.1.34
Engineered: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Gene: Mvaa, Mvaa_1, Mvaa_3, Aww74_09880, Ers019416_00185, Ers019687_00346, Ers020135_00205, Ers020138_01692, Ers02014 Ers020145_01986, Ers020146_01579, Ers020155_00051, Ers02015 Ers020520_02006, Ers020525_01644, Ers020528_00536, Ers02053 Ers020532_00514, Ers020539_01756, Ers020726_02213, Ers02072 Ers020822_01277, Ers021354_03805, Ers021629_07183, Ers02173 Ers232524_02161, Ers367337_00780, Ers409444_00519;
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pskb3
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.865 131.248 57.957 90.00 102.54 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL, HMG, PE4 enzyme Oxidoreductase E.C.1.1.1.34 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Features and Domain Movements Controlling Substrate Binding and Cofactor Specificity in Class II HMG-CoA Reductase., Miller BR, Kung Y, Biochemistry. 2018 Feb 6;57(5):654-662. doi: 10.1021/acs.biochem.7b00999. Epub, 2017 Dec 21. PMID:29224355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (5wpk.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 5WPK
  • CSU: Contacts of Structural Units for 5WPK
  • Structure Factors (1423 Kb)
  • Retrieve 5WPK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WPK from S2C, [Save to disk]
  • View 5WPK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WPK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wpk_B] [5wpk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WPK
  • Community annotation for 5WPK at PDBWiki (http://pdbwiki.org)

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