5WQT Signaling Protein date Nov 28, 2016
title Structure Of A Protein Involved In Pyroptosis
authors S.Kuang, J.Li
compound source
Molecule: Gasdermin-D
Chain: A, B
Fragment: C-Terminal (Unp Residues 276-484)
Synonym: Gasdermin Domain-Containing Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gsdmd, Dfna5l, Gsdmdc1, Fksg10
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.235 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.886 86.165 112.145 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.64 Å
ligand CIT, GOL, MSE enzyme
Primary referenceStructure insight of GSDMD reveals the basis of GSDMD autoinhibition in cell pyroptosis., Kuang S, Zheng J, Yang H, Li S, Duan S, Shen Y, Ji C, Gan J, Xu XW, Li J, Proc Natl Acad Sci U S A. 2017 Sep 19. pii: 201708194. doi:, 10.1073/pnas.1708194114. PMID:28928145
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (5wqt.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 5WQT
  • CSU: Contacts of Structural Units for 5WQT
  • Structure Factors (401 Kb)
  • Retrieve 5WQT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WQT from S2C, [Save to disk]
  • View 5WQT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WQT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wqt_B] [5wqt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WQT
  • Community annotation for 5WQT at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science