5WU5 Transferase date Dec 16, 2016
title Crystal Structure Of Apo Human Tut1, Form III
authors S.Yamashita, K.Tomita
compound source
Molecule: Speckle Targeted Pip5k1a-Regulated Poly(A) Polyme
Chain: A, B, C, D
Fragment: Unp Residues 141-874
Synonym: Star-Pap,Rna-Binding Motif Protein 21,Rna-Binding 21,U6 Snrna-Specific Terminal Uridylyltransferase 1,U6-Tuta
Ec: 2.7.7.19,2.7.7.52
Engineered: Yes
Mutation: Yes
Other_details: 141-874(C-Term) Of Human Tut1 Was Cloned To Vector With Ndei And Xhoi Sites. Residues Of 235-304 And 65 Deleted For Crystallization. C501a And C504s Mutations Were Introduced To Improve The Crystals.
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tut1, Rbm21
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.214 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.140 173.140 208.580 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.40 Å
ligand
enzyme Transferase E.C.2.7.7.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (633 Kb) [Save to disk]
  • Biological Unit Coordinates (5wu5.pdb1.gz) 158 Kb
  • Biological Unit Coordinates (5wu5.pdb2.gz) 158 Kb
  • Biological Unit Coordinates (5wu5.pdb3.gz) 159 Kb
  • Biological Unit Coordinates (5wu5.pdb4.gz) 160 Kb
  • Biological Unit Coordinates (5wu5.pdb5.gz) 623 Kb
  • CSU: Contacts of Structural Units for 5WU5
  • Structure Factors (437 Kb)
  • Retrieve 5WU5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WU5 from S2C, [Save to disk]
  • Re-refined 5wu5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5WU5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5WU5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wu5_D] [5wu5_A] [5wu5_B] [5wu5_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WU5
  • Community annotation for 5WU5 at PDBWiki (http://pdbwiki.org)

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