5WVG Hydrolase date Dec 24, 2016
title Crystal Structure Of A Mutant Insect Group III Chitinase Com (Glcnac)5 (Cad1-E647l-(Glcnac)5 ) From Ostrinia Furnacalis
authors T.Liu, Y.Zhou, Q.Yang
compound source
Molecule: Chitinase
Chain: A
Fragment: Unp Residues 528-987
Ec: 3.2.1.14
Engineered: Yes
Mutation: Yes
Organism_scientific: Ostrinia Furnacalis
Organism_common: Asian Corn Borer
Organism_taxid: 93504
Expression_system: Komagataella Pastoris Cbs 7435
Expression_system_taxid: 981350
symmetry Space Group: P 41 21 2
R_factor 0.205 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.362 71.362 175.023 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.69 Å
ligand NAG enzyme Hydrolase E.C.3.2.1.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe deduced role of a chitinase containing two nonsynergistic catalytic domains., Liu T, Zhu W, Wang J, Zhou Y, Duan Y, Qu M, Yang Q, Acta Crystallogr D Struct Biol. 2018 Jan 1;74(Pt 1):30-40. doi:, 10.1107/S2059798317018289. Epub 2018 Jan 1. PMID:29372897
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (5wvg.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 5WVG
  • CSU: Contacts of Structural Units for 5WVG
  • Structure Factors (96 Kb)
  • Retrieve 5WVG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WVG from S2C, [Save to disk]
  • View 5WVG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WVG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wvg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WVG
  • Community annotation for 5WVG at PDBWiki (http://pdbwiki.org)

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