5WY5 Metal Binding Protein date Jan 11, 2017
title Crystal Structure Of Mageg1 And Nse1 Complex
authors M.Yang, J.Gao
compound source
Molecule: Melanoma-Associated Antigen G1
Chain: B
Fragment: Unp Residues 78-294
Synonym: Non-Smc Element 3 Homolog,Hepatocellular Carcinoma Associated Protein 4,Mage-G1 Antigen, Non-Structural Mainte Chromosomes Element 3 Homolog;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsmce3, Hca4, Mageg1, Ndnl2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsfduet

Molecule: Non-Structural Maintenance Of Chromosomes Element Homolog;
Chain: A
Fragment: Unp Residues 9-246
Synonym: Non-Smc Element 1 Homolog
Ec: 6.3.2.-
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsmce1, Hspc333, Hspc337
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsfduet
symmetry Space Group: P 21 21 2
R_factor 0.216 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.257 154.327 53.726 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.92 Å
ligand MG, ZN enzyme Ligase E.C.6.3.2 BRENDA
note 5WY5 supersedes 3NW0
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMAGE-RING protein complexes comprise a family of E3 ubiquitin ligases., Doyle JM, Gao J, Wang J, Yang M, Potts PR, Mol Cell. 2010 Sep 24;39(6):963-74. PMID:20864041
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (5wy5.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 5WY5
  • CSU: Contacts of Structural Units for 5WY5
  • Structure Factors (365 Kb)
  • Retrieve 5WY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WY5 from S2C, [Save to disk]
  • Re-refined 5wy5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5WY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WY5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5wy5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wy5_B] [5wy5_A] [5wy5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WY5
  • Community annotation for 5WY5 at PDBWiki (http://pdbwiki.org)

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