5X0W	Ligase Protein Binding	date	Jan 23, 2017
title	Molecular Mechanism For The Binding Between Sharpin And Hoip
authors	J.Liu, F.Li, X.Cheng, L.Pan
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Rnf31 Chain: A, C, E, G Fragment: Unp Residues 480-639 Synonym: Hoil-1-Interacting Protein,Hoip,Ring Finger Protei In-Between-Ring-Finger Ubiquitin-Associated Domain Protein; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rnf31, Zibra Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Sharpin Chain: B, D, F, H Fragment: Unp Residues 206-309 Synonym: Shank-Associated Rh Domain-Interacting Protein,Sha Interacting Protein-Like 1,Hsipl1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sharpin, Sipl1, Psec0216 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 32	R_factor 0.261 R_Free 0.302
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.347 101.347 146.982 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	MSE	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A, C, G, E
Primary reference	Structural Insights into SHARPIN-Mediated Activation of HOIP for the Linear Ubiquitin Chain Assembly., Liu J, Wang Y, Gong Y, Fu T, Hu S, Zhou Z, Pan L, Cell Rep. 2017 Oct 3;21(1):27-36. doi: 10.1016/j.celrep.2017.09.031. PMID:28978479

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk] Biological Unit Coordinates (5x0w.pdb1.gz) 64 Kb Biological Unit Coordinates (5x0w.pdb2.gz) 65 Kb Biological Unit Coordinates (5x0w.pdb3.gz) 71 Kb Biological Unit Coordinates (5x0w.pdb4.gz) 63 Kb LPC: Ligand-Protein Contacts for 5X0W CSU: Contacts of Structural Units for 5X0W Structure Factors (1413 Kb) Retrieve 5X0W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5X0W from S2C, [Save to disk]

View 5X0W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5X0W

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5x0w_C] [5x0w_H] [5x0w_D] [5x0w_A] [5x0w_G] [5x0w_E] [5x0w_F] [5x0w_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5X0W at PDBWiki (http://pdbwiki.org)

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