5X22 Crystal structure of Thermus thermophilus transcription initiation complex with GpA and CMPcPP date
authors Zhang, Y., Ebright, R.
compound source
symmetry
R_factor
R_Free 0.2503
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.35
ligand 2TM, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, K, B, L


F, P
  • bacterial sigma factor activ...


    • M, C


    N, D


    O, E


    Primary referenceAntibacterial Nucleoside-Analog Inhibitor of Bacterial RNA Polymerase., Maffioli SI, Zhang Y, Degen D, Carzaniga T, Del Gatto G, Serina S, Monciardini P, Mazzetti C, Guglierame P, Candiani G, Chiriac AI, Facchetti G, Kaltofen P, Sahl HG, Deho G, Donadio S, Ebright RH, Cell. 2017 Jun 15;169(7):1240-1248.e23. doi: 10.1016/j.cell.2017.05.042. PMID:28622509
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1163 Kb) [Save to disk]
  • Biological Unit Coordinates (5x22.pdb1.gz) 578 Kb
  • Biological Unit Coordinates (5x22.pdb2.gz) 591 Kb
  • LPC: Ligand-Protein Contacts for 5X22
  • CSU: Contacts of Structural Units for 5X22
  • Structure Factors (2937 Kb)
  • Retrieve 5X22 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X22 from S2C, [Save to disk]
  • Re-refined 5x22 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5X22 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5X22
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5x22 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x22_S] [5x22_I] [5x22_G] [5x22_A] [5x22_B] [5x22_O] [5x22_K] [5x22_Q] [5x22_P] [5x22_D] [5x22_C] [5x22_N] [5x22_R] [5x22_F] [5x22_H] [5x22_L] [5x22_M] [5x22_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5X22
  • Community annotation for 5X22 at PDBWiki (http://pdbwiki.org)

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