OCA Atlas for 5X22

5X22

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

2TM, MG, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, L, K, B
F, P	bacterial sigma factor activ...
M, C
N, D
O, E

Primary reference

Antibacterial Nucleoside-Analog Inhibitor of Bacterial RNA Polymerase., Maffioli SI, Zhang Y, Degen D, Carzaniga T, Del Gatto G, Serina S, Monciardini P, Mazzetti C, Guglierame P, Candiani G, Chiriac AI, Facchetti G, Kaltofen P, Sahl HG, Deho G, Donadio S, Ebright RH, Cell. 2017 Jun 15;169(7):1240-1248.e23. doi: 10.1016/j.cell.2017.05.042. PMID:28622509

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1142 Kb) [Save to disk]

Biological Unit Coordinates (5x22.pdb1.gz) 567 Kb

Biological Unit Coordinates (5x22.pdb2.gz) 580 Kb

LPC: Ligand-Protein Contacts for 5X22

CSU: Contacts of Structural Units for 5X22

Structure Factors (2937 Kb)

Retrieve 5X22 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5X22 from S2C, [Save to disk]

Re-refined 5x22 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5X22 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5x22_A] [5x22_B] [5x22_C] [5x22_D] [5x22_E] [5x22_F] [5x22_G] [5x22_H] [5x22_I] [5x22_K] [5x22_L] [5x22_M] [5x22_N] [5x22_O] [5x22_P] [5x22_Q] [5x22_R] [5x22_S]

SWISS-PROT database:

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