5XF7 Chaperone date Apr 08, 2017
title Crystal Structure Of Human Protein Disulfide Isomerase-Like The Testis
authors H.Li, J.Li, Y.Liu, H.Liang
compound source
Molecule: Protein Disulfide-Isomerase-Like Protein Of The T
Chain: A
Fragment: Unp Residues 21-584
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdilt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.197 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.361 97.361 57.588 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.38 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal and solution structures of human protein disulfide isomerase-like protein of the testis (PDILT) provide insight into its chaperone activity., Li H, Yang K, Wang W, Niu Y, Li J, Dong Y, Liu Y, Wang CC, Wang L, Liang H, J Biol Chem. 2017 Dec 4. pii: M117.797290. doi: 10.1074/jbc.M117.797290. PMID:29203529
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (5xf7.pdb1.gz) 77 Kb
  • CSU: Contacts of Structural Units for 5XF7
  • Structure Factors (170 Kb)
  • Retrieve 5XF7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XF7 from S2C, [Save to disk]
    • View 5XF7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5XF7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xf7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5XF7
  • Community annotation for 5XF7 at PDBWiki (http://pdbwiki.org)

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