5XFQ	Transcription Dna	date	Apr 11, 2017
title	Ternary Complex Of Phf1, A Dna Duplex And A Histone Peptide
authors	Z.Wang, H.Li
compound		source
Molecule: Phd Finger Protein 1 Chain: A, B Fragment: Unp Residues 25-360 Synonym: Protein Phf1,Polycomb-Like Protein 1,Mpcl1,T-Compl Expressed 3; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Phf1, Plc1, Tctex-3, Tctex3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Dna (5'-D(Gpgpgpcpgpgpcpcpgpcpcpcpt) Chain: C, D Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Peptide From Histone H3 Chain: E, F Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.222 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 141.243 62.550 97.338 90.00 103.04 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	M3L, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Polycomb-like proteins link the PRC2 complex to CpG islands., Li H, Liefke R, Jiang J, Kurland JV, Tian W, Deng P, Zhang W, He Q, Patel DJ, Bulyk ML, Shi Y, Wang Z, Nature. 2017 Sep 14;549(7671):287-291. doi: 10.1038/nature23881. Epub 2017 Sep 6. PMID:28869966

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk] Biological Unit Coordinates (5xfq.pdb1.gz) 112 Kb LPC: Ligand-Protein Contacts for 5XFQ CSU: Contacts of Structural Units for 5XFQ Structure Factors (481 Kb) Retrieve 5XFQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XFQ from S2C, [Save to disk]

View 5XFQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5XFQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xfq_F] [5xfq_C] [5xfq_D] [5xfq_A] [5xfq_B] [5xfq_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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