5XGR Viral Protein date Apr 16, 2017
title Structure Of The S1 Subunit C-Terminal Domain From Bat-Deriv Coronavirus Hku5 Spike Protein
authors H.Xue, J.Qi, H.Song, W.Qihui, Y.Shi, G.F.Gao
compound source
Molecule: Spike Protein S1
Chain: A, B, C, D, E, F, G, H
Fragment: Unp Residues 389-586
Engineered: Yes
 Organism_scientific: Bat Coronavirus Hku5
Organism_common: Btcov
Organism_taxid: 694008
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: Hi5
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.612 212.659 87.943 90.00 94.76 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand NAG enzyme
Primary referenceStructure of the S1 subunit C-terminal domain from bat-derived coronavirus HKU5 spike protein., Han X, Qi J, Song H, Wang Q, Zhang Y, Wu Y, Lu G, Yuen KY, Shi Y, Gao GF, Virology. 2017 Apr 19;507:101-109. doi: 10.1016/j.virol.2017.04.016. PMID:28432925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (537 Kb) [Save to disk]
  • Biological Unit Coordinates (5xgr.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (5xgr.pdb2.gz) 69 Kb
  • Biological Unit Coordinates (5xgr.pdb3.gz) 70 Kb
  • Biological Unit Coordinates (5xgr.pdb4.gz) 69 Kb
  • Biological Unit Coordinates (5xgr.pdb5.gz) 70 Kb
  • Biological Unit Coordinates (5xgr.pdb6.gz) 70 Kb
  • Biological Unit Coordinates (5xgr.pdb7.gz) 71 Kb
  • Biological Unit Coordinates (5xgr.pdb8.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 5XGR
  • CSU: Contacts of Structural Units for 5XGR
  • Structure Factors (1605 Kb)
  • Retrieve 5XGR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XGR from S2C, [Save to disk]
  • Re-refined 5xgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5XGR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5XGR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xgr_B] [5xgr_G] [5xgr_A] [5xgr_C] [5xgr_E] [5xgr] [5xgr_F] [5xgr_D] [5xgr_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5XGR
  • Community annotation for 5XGR at PDBWiki (http://pdbwiki.org)

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