5XLO Immune System Rna date May 11, 2017
title Anti-Crispr Proteins Acrf12 Bound To Csy Surveillance Compl 32nt Spacer Crrna Backbone Region
authors R.Peng, Y.Shi, G.F.Gao
compound source
Molecule: Crispr-Associated Protein Csy3
Chain: A, B, C, D, E, F
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa (Strain Ucbpp-P
Organism_taxid: 208963
Strain: Ucbpp-Pa14
Gene: Csy3, Csy1-3, Pa14_33310
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_strain: Bl21-Gold(De3)Plyss Ag

Molecule: Crrna With 32nt Spacer Sequence
Chain: K
Engineered: Yes

Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_strain: Bl21-Gold(De3)Plyss Ag

Molecule: Uncharacterized Protein Acrf1
Chain: N, M
Engineered: Yes

Organism_scientific: Pseudomonas Phage Jbd30
Organism_taxid: 1223260
Gene: Jbd30_035
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_strain: Bl21-Gold(De3)Plyss Ag
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceAlternate binding modes of anti-CRISPR viral suppressors AcrF1/2 to Csy surveillance complex revealed by cryo-EM structures., Peng R, Xu Y, Zhu T, Li N, Qi J, Chai Y, Wu M, Zhang X, Shi Y, Wang P, Wang J, Gao N, Gao GF, Cell Res. 2017 Jul;27(7):853-864. doi: 10.1038/cr.2017.79. Epub 2017 Jun 2. PMID:28574055
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (283 Kb) [Save to disk]
  • Biological Unit Coordinates (5xlo.pdb1.gz) 276 Kb
  • CSU: Contacts of Structural Units for 5XLO
  • Retrieve 5XLO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XLO from S2C, [Save to disk]
  • View 5XLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XLO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xlo_C] [5xlo_E] [5xlo_D] [5xlo_M] [5xlo_K] [5xlo_F] [5xlo_N] [5xlo_B] [5xlo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XLO
  • Community annotation for 5XLO at PDBWiki (http://pdbwiki.org)

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