5XMD Hydrolase date May 14, 2017
title Crystal Structure Of Epoxide Hydrolase Vreh1 From Vigna Radi
authors X.D.Kong, J.H.Xu, J.H.Zhou
compound source
Molecule: Epoxide Hydrolase A
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Vigna Radiata
Organism_common: Mung Bean
Organism_taxid: 157791
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.691 51.892 124.294 90.00 94.27 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (5xmd.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (5xmd.pdb2.gz) 106 Kb
  • CSU: Contacts of Structural Units for 5XMD
  • Structure Factors (1931 Kb)
  • Retrieve 5XMD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XMD from S2C, [Save to disk]
  • View 5XMD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XMD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xmd_B] [5xmd_C] [5xmd_D] [5xmd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XMD
  • Community annotation for 5XMD at PDBWiki (http://pdbwiki.org)

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