5XTZ Protein Binding date Jun 21, 2017
title Crystal Structure Of Gas41 Yeats Bound To H3k27ac Peptide
authors H.T.Li, D.Zhao
compound source
Molecule: Yeats Domain-Containing Protein 4
Chain: A, B, C, D
Fragment: Unp Residues 15-159
Synonym: Glioma-Amplified Sequence 41,Gas41,Numa-Binding Pr Nubi1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Yeats4, Gas41
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_strain: K-12

Molecule: Thr-Lys-Ala-Ala-Arg-Aly-Ser-Ala-Pro-Ala
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.864 80.663 107.028 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.11 Å
ligand ACT, ALY enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceGas41 links histone acetylation to H2A.Z deposition and maintenance of embryonic stem cell identity., Hsu CC, Zhao D, Shi J, Peng D, Guan H, Li Y, Huang Y, Wen H, Li W, Li H, Shi X, Cell Discov. 2018 Jun 12;4:28. doi: 10.1038/s41421-018-0027-0. eCollection 2018. PMID:29900004
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (5xtz.pdb1.gz) 97 Kb
  • Biological Unit Coordinates (5xtz.pdb2.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 5XTZ
  • CSU: Contacts of Structural Units for 5XTZ
  • Structure Factors (525 Kb)
  • Retrieve 5XTZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XTZ from S2C, [Save to disk]
  • View 5XTZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XTZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xtz_C] [5xtz_B] [5xtz_D] [5xtz_A] [5xtz_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XTZ
  • Community annotation for 5XTZ at PDBWiki (http://pdbwiki.org)

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