5Y4E Protein Binding date Aug 03, 2017
title Crystal Structure Of Ankb Ankyrin Repeats R8-14 In Complex W Autoinhibition Segment Ai-B
authors K.Chen, J.Li, C.Wang, Z.Wei, M.Zhang
compound source
Molecule: Ankyrin-2,Ankyrin-2
Chain: A, B
Fragment: Unp Residues 857-896,Unp Residues 264-483
Synonym: Ank-2,Ankyrin-B,Brain Ankyrin,Non-Erythroid Ankyri Ankyrin-B,Brain Ankyrin,Non-Erythroid Ankyrin;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ank2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.192 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
186.085 186.085 75.354 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.34 Å
ligand GOL, SO4 enzyme
Primary referenceAutoinhibition of ankyrin-B/G membrane target bindings by intrinsically disordered segments from the tail regions., Chen K, Li J, Wang C, Wei Z, Zhang M, Elife. 2017 Aug 25;6. pii: e29150. doi: 10.7554/eLife.29150. PMID:28841137
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (5y4e.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (5y4e.pdb2.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 5Y4E
  • CSU: Contacts of Structural Units for 5Y4E
  • Structure Factors (863 Kb)
  • Retrieve 5Y4E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y4E from S2C, [Save to disk]
    • View 5Y4E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Y4E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y4e_B] [5y4e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Y4E
  • Community annotation for 5Y4E at PDBWiki (http://pdbwiki.org)

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