5Y7Z Transferase Immune System date Aug 18, 2017
title Complex Structure Of Cyclin G-Associated Kinase With Gefitin
authors N.Ohbayashi, K.Murayama, M.Kato-Murayama, M.Shirouzu
compound source
Molecule: Cyclin-G-Associated Kinase
Chain: A, B
Fragment: Unp Residues 25-335
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gak
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Nanobody
Chain: D, C
Engineered: Yes

Organism_scientific: Lama Glama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.353 85.513 149.042 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand IRE, SO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis for the Inhibition of Cyclin G-Associated Kinase by Gefitinib., Ohbayashi N, Murayama K, Kato-Murayama M, Kukimoto-Niino M, Uejima T, Matsuda T, Ohsawa N, Yokoyoma S, Nojima H, Shirouzu M, ChemistryOpen. 2018 Sep 10;7(9):721-727. doi: 10.1002/open.201800177. eCollection, 2018 Sep. PMID:30214852
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (5y7z.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (5y7z.pdb2.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 5Y7Z
  • CSU: Contacts of Structural Units for 5Y7Z
  • Structure Factors (661 Kb)
  • Retrieve 5Y7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y7Z from S2C, [Save to disk]
  • View 5Y7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5Y7Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y7z_D] [5y7z_B] [5y7z_C] [5y7z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5Y7Z
  • Community annotation for 5Y7Z at PDBWiki (http://pdbwiki.org)

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