5Y88		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GTP, IHP, MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A metallopeptidase activity C G U2-type catalytic step 1 spl... H U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... I U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... J U2-type catalytic step 1 spl... K U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... L M N U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... O P Q U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... R S T U V W b, i e, l f, m g, n h, a j, c k, d o p r, t, q, s U2-type catalytic step 1 spl...
Primary reference	Structure of an Intron Lariat Spliceosome from Saccharomyces cerevisiae., Wan R, Yan C, Bai R, Lei J, Shi Y, Cell. 2017 Sep 21;171(1):120-132.e12. doi: 10.1016/j.cell.2017.08.029. Epub 2017 , Sep 14. PMID:28919079

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1495 Kb) [Save to disk] Biological Unit Coordinates (5y88.pdb1.gz) 1445 Kb LPC: Ligand-Protein Contacts for 5Y88 CSU: Contacts of Structural Units for 5Y88 Retrieve 5Y88 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5Y88 from S2C, [Save to disk]

View 5Y88 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5y88_A] [5y88_B] [5y88_C] [5y88_D] [5y88_E] [5y88_F] [5y88_G] [5y88_H] [5y88_I] [5y88_J] [5y88_K] [5y88_L] [5y88_M] [5y88_N] [5y88_O] [5y88_P] [5y88_Q] [5y88_R] [5y88_S] [5y88_T] [5y88_U] [5y88_V] [5y88_W] [5y88_a] [5y88_b] [5y88_c] [5y88_d] [5y88_e] [5y88_f] [5y88_g] [5y88_h] [5y88_i] [5y88_j] [5y88_k] [5y88_l] [5y88_m] [5y88_n] [5y88_o] [5y88_p] [5y88_q] [5y88_r] [5y88_s] [5y88_t] [5y88_x] SWISS-PROT database:

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