5Y8V Nuclear Protein date Aug 21, 2017
title Crystal Structure Of Gas41
authors Y.Wang, Q.Hao
compound source
Molecule: Yeats Domain-Containing Protein 4
Chain: B, A, C, D
Fragment: Unp Residues 21-160
Synonym: Glioma-Amplified Sequence 41,Gas41,Numa-Binding Pr Nubi1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Yeats4, Gas41
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032
symmetry Space Group: P 21 21 21
R_factor 0.237 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.467 57.212 205.854 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.61 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceIdentification of the YEATS domain of GAS41 as a pH-dependent reader of histone succinylation., Wang Y, Jin J, Chung MWH, Feng L, Sun H, Hao Q, Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):2365-2370. doi:, 10.1073/pnas.1717664115. Epub 2018 Feb 20. PMID:29463709
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5y8v.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (5y8v.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (5y8v.pdb3.gz) 24 Kb
  • Biological Unit Coordinates (5y8v.pdb4.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 5Y8V
  • CSU: Contacts of Structural Units for 5Y8V
  • Structure Factors (430 Kb)
  • Retrieve 5Y8V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y8V from S2C, [Save to disk]
    • View 5Y8V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Y8V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y8v_C] [5y8v_D] [5y8v_A] [5y8v_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Y8V
  • Community annotation for 5Y8V at PDBWiki (http://pdbwiki.org)

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