5Y9F	Viral Protein Immune System	date	Aug 24, 2017
title	Crystal Structure Of Hpv59 Pentamer In Complex With The Fab Of Antibody 28f10
authors	S.W.Li, Z.H.Li
compound		source
Molecule: Major Capsid Protein L1 Chain: A, B, C, D, E, F, G, H, I, J Fragment: Unp Residues 10-508 Engineered: Yes Mutation: Yes		Organism_scientific: Human Papillomavirus Type 59 Organism_taxid: 37115 Gene: Orf Putative L1, L1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Light Chains Of Fab Fragment Of Antibody 28f10 Chain: K, O, Q, S, M, c, W, Y, a, U		Organism_scientific: Mus Musculus Organism_taxid: 10090
Molecule: Heavy Chain Of Fab Fragment Of Antibody 28f10 Chain: L, P, R, T, N, d, V, X, Z, b		Organism_scientific: Mus Musculus Organism_taxid: 10090
symmetry	Space Group: P 1 21 1	R_factor 0.230 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.265 417.233 134.942 90.00 111.02 90.00
method	X-Ray Diffraction	resolution	3.35 Å
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G
Primary reference	Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus., Li Z, Wang D, Gu Y, Song S, He M, Shi J, Liu X, Wei S, Li J, Yu H, Zheng Q, Yan X, Baker TS, Zhang J, McLellan JS, Li S, Xia N, MBio. 2017 Sep 26;8(5). pii: e00787-17. doi: 10.1128/mBio.00787-17. PMID:28951471

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2881 Kb) [Save to disk] Biological Unit Coordinates (5y9f.pdb1.gz) 1431 Kb Biological Unit Coordinates (5y9f.pdb2.gz) 1439 Kb CSU: Contacts of Structural Units for 5Y9F Structure Factors (3917 Kb) Retrieve 5Y9F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5Y9F from S2C, [Save to disk]

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Visual 3D analysis of 5Y9F

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5y9f_N] [5y9f_J] [5y9f_Y] [5y9f_Z] [5y9f_O] [5y9f_F] [5y9f_L] [5y9f_T] [5y9f_W] [5y9f_K] [5y9f_c] [5y9f_C] [5y9f_D] [5y9f_U] [5y9f_P] [5y9f_S] [5y9f_G] [5y9f_a] [5y9f_I] [5y9f_Q] [5y9f_H] [5y9f_E] [5y9f_M] [5y9f_B] [5y9f_b] [5y9f_R] [5y9f_A] [5y9f_X] [5y9f_V] [5y9f_d] SWISS-PROT database: Domain organization of by SWISSPFAM

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