OCA Atlas for 5Y9F

5Y9F

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A, D, E, C, G, I, J, B, F, H

Primary reference

Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus., Li Z, Wang D, Gu Y, Song S, He M, Shi J, Liu X, Wei S, Li J, Yu H, Zheng Q, Yan X, Baker TS, Zhang J, McLellan JS, Li S, Xia N, MBio. 2017 Sep 26;8(5). pii: e00787-17. doi: 10.1128/mBio.00787-17. PMID:28951471

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2816 Kb) [Save to disk]

Biological Unit Coordinates (5y9f.pdb1.gz) 1399 Kb

Biological Unit Coordinates (5y9f.pdb2.gz) 1406 Kb

CSU: Contacts of Structural Units for 5Y9F

Structure Factors (3917 Kb)

Retrieve 5Y9F in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5Y9F from S2C, [Save to disk]

View 5Y9F in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5y9f_V] [5y9f_W] [5y9f_X] [5y9f_Y] [5y9f_A] [5y9f_B] [5y9f_C] [5y9f_Z] [5y9f_D] [5y9f_E] [5y9f_F] [5y9f_G] [5y9f_H] [5y9f_I] [5y9f_J] [5y9f_K] [5y9f_L] [5y9f_M] [5y9f_N] [5y9f_O] [5y9f_P] [5y9f_Q] [5y9f_R] [5y9f_S] [5y9f_T] [5y9f_U] [5y9f_a] [5y9f_b] [5y9f_c] [5y9f_d]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]